Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs614940 chr5:94610385 G/T 1.08E-8 177 2.15 18.48 14.33 KM Plot
PAAD rs61517716 chr2:70455204 C/T 0 178 15.37 17.4 1.03 KM Plot
PAAD rs61730415 chr2:128477084 G/C 9.11E-10 177 15.67 12.6 2.2 KM Plot
PAAD rs61749277 chr1:16262404 C/T 1.96E-6 177 15.67 11.77 3.43 KM Plot
PAAD rs61753119 chr7:6193752 G/A 0 172 15.53 14.88 1.03 KM Plot
PAAD rs61770557 chr1:76423303 C/G 4.77E-6 174 15.77 12.6 3.67 KM Plot
PAAD rs62058026 chr17:55341229 G/A 2.59E-6 173 15.3 17.45 3.43 KM Plot
PAAD rs621231 chr1:114862518 T/C 0 173 15.55 15.63 0.4 KM Plot
PAAD rs62125036 chr19:33426610 C/T 4.22E-5 178 15.48 15.62 4.83 KM Plot
PAAD rs62125055 chr19:33451199 G/T 3.41E-5 177 15.57 13.58 4.83 KM Plot
PAAD rs62127361 chr19:33458195 T/C 2.02E-9 174 15.48 15.57 2.2 KM Plot
PAAD rs62127362 chr19:33458479 G/C 2.98E-9 171 15.48 15.67 2.2 KM Plot
PAAD rs62176305 chr2:217939506 C/T 2.52E-5 174 15.43 16.7 5.97 KM Plot
PAAD rs62176307 chr2:217940038 A/C 2.24E-5 171 15.43 16.17 5.97 KM Plot
PAAD rs62273025 chr4:3598294 T/A 4.94E-5 173 15.42 15.77 4.52 KM Plot